Automated Discrimination of Pathological Regions in Tissue Images: Unsupervised Clustering vs Supervised SVM Classification

Recognizing and isolating cancerous cells from non pathological tissue areas (e.g. connective stroma) is crucial for fast and objective immunohistochemical analysis of tissue images. This operation allows the further application of fully-automated techniques for quantitative evaluation of protein activity, since it avoids the necessity of a preventive manual selection of the representative pathological areas in the image, as well as of taking pictures only in the pure-cancerous portions of the tissue. In this paper we present a fully-automated method based on unsupervised clustering that performs tissue segmentations highly comparable with those provided by a skilled operator, achieving on average an accuracy of 90%. Experimental results on a heterogeneous dataset of immunohistochemical lung cancer tissue images demonstrate that our proposed unsupervised approach overcomes the accuracy of a theoretically superior supervised method such as Support Vector Machine (SVM) by 8%

Electromagnetic absorption of a pinned Wigner crystal at finite temperatures

We investigate the microwave absorption of a pinned, two-dimensional Wigner crystal in a strong magnetic field at finite temperatures. Using a model of a uniform commensurate pinning potential, we analyze thermal broadening of the electromagnetic absorption resonance. Surprisingly, we find that the pinning resonance peak should remain sharp even when the temperature is comparable or greater than the peak frequency. This result agrees qualitatively with recent experimental observations of the ac conductivity in two-dimensional hole systems in a magnetically induced insulating state. It is shown, in analogy with Kohn's theorem, that the electron-electron interaction does not affect the response of a harmonically pinned Wigner crystal to a spatially uniform external field at any temperature. We thus focus on anharmonicity in the pinning potential as a source of broadening. Using a 1/N expansion technique, we show that the broadening is introduced through the self-energy corrections to the magnetophonon Green's functions.Comment: 21 pages, 9 eps figure

Effect of biomaterial properties on bone healing in a rabbit tooth extraction socket model.

Item does not contain fulltextIn this work we sought to understand the effect of biomaterial properties upon healing bone tissue. We hypothesized that a hydrophilic polymer gel implanted into a bone tissue defect would impede the healing process owing to the biomaterial's prevention of protein adsorption and thus cell adhesion. To test this hypothesis, healing bone was investigated within a rabbit incisor extraction socket, a subcritical size bone defect that resists significant soft tissue invasion by virtue of its conformity. After removal of the incisor teeth, one tooth socket was left as an empty control, one was filled with crosslinked polymer networks formed from the hydrophobic polymer poly(propylene fumarate) (PPF), and one was filled with a hydrogel formed from the hydrophilic oligomer oligo(poly(ethylene glycol) fumarate) (OPF). At five different times (4 days as well as 1, 2, 4, and 8 weeks), jaw bone specimens containing the tooth sockets were removed. We analyzed bone healing by histomorphometrical analysis of hematoxylin and eosin stained sections as well as immunohistochemically stained sections. The proposed hypothesis, that a hydrophilic material would hinder bone healing, was supported by the histomorphometrical results. In addition, the immunohistochemical results reflect molecular signaling indicative of the early invasion of platelets, the vascularization of wound-healing tissue, the differentiation of migrating progenitor cells, and the formation and remodeling of bone tissue. Finally, the results emphasize the need to consider biomaterial properties and their differing effects upon endogenous growth factors, and thus bone healing, during the development of tissue engineering devices

Laminin ?4 deficient mice exhibit decreased capacity for adipose tissue expansion and weight gain

10.1371/journal.pone.0109854PLoS ONE910e10985

Determining Malignancy of Brain Tumors by Analysis of Vessel Shape

Abstract. Vessels supplying malignant tumors are abnormally shaped. This paper describes a blinded study that assessed tumor malignancy by analyzing vessel shape within MR images of 21 brain tumors prior to surgical resection. The program’s assessment of malignancy was then compared to the final histological diagnosis. All tumors were classified correctly as benign or malignant. Of importance, malignancy-associated vessel abnormalities extend outside apparent tumor margins, thus allowing classification of even small or hemorrhagic tumors.